GenetICA-Network /// Microarray version /// RNAseq version /// >>Mouse version<<

© 2020 - Department of Medical Oncology, University Medical Center Groningen

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Predictions available for 18,425 genes.


Predictions are based on gene expression profiles of 25,585 sample.



Gene set databaseNumber of gene sets included
Gene Ontology - Biological Process4188
Gene Ontology - Molecular Function833
Gene Ontology - Cellular Component525
REACTOME636
KEGG186
BIOCARTA207
Chemical and Genetic Perturbations (CGP MSigDB v6.2)2951
Transcription Factor Targets (TFT MSigDB v6.2)575
MicroRNA Targets (MIR MSigDB v6.2)207
Hallmark Gene Sets50
Cancer Gene Neighborhoods (CGN MSigDB v6.2)427
Cancer Modules (CM MSigDB v6.2)411
Oncogenic Signatures189
Immunologic Signatures4872
Mammalian Phenotypes (MGI April 2018)3911
Human Phenotype Ontology (April 2018)3075


Precompiled version for the mac OS (11.1) of Analyertool 5 (to run first install QT version 5.15.1): link - README


For question, contact me at r.s.n.fehrmann@umcg.nl


Also see my website at: www.rudolffehrmann.nl


Support data for GenetICA-Network /// Mouse version


Readme explaining content of files: link

consensus independent component resultsDownload links
consensus independent components link
consensus mixing matrixlink
gene set definitionsDownload links
gene set definitions: Gene Ontology - Biological Processlink
gene set definitions: Gene Ontology - Molecular Functionlink
gene set definitions: Gene Ontology - Cellular Componentlink
gene set definitions: REACTOMElink
gene set definitions: KEGGlink
gene set definitions: BIOCARTAlink
gene set definitions: Chemical and Genetic Perturbationslink
gene set definitions: Transcription Factor Targetslink
gene set definitions: MicroRNA Targetslink
gene set definitions: Hallmark Gene Setslink
gene set definitions: Cancer Gene Neighborhoodslink
gene set definitions: Cancer Moduleslink
gene set definitions: Oncogenic Signatureslink
gene set definitions: Immunologic Signatureslink
gene set definitions: Mammalian Phenotypeslink
gene set definitions: Human Phenotype Ontologylink
prediction scores for all gene/gene set combinationDownload links
Hallmarklink
Oncogenic Signatureslink
BIOCARTAlink
KEGGlink
MicroRNA Targetslink
Cancer Gene Neighborhoodslink
Cancer Moduleslink
REACTOMElink
Gene Ontology - Cellular Componentlink
Gene Ontology - Molecular Functionlink
Gene Ontology - Biological Processlink
Chemical and Genetic Pertubationslink
Transcription Factor Targetslink
Immunologic Signatureslink
Mammalian Phenotypeslink
Human Phenotype Ontologylink
mean vector of gene set members in consensus mixing matrixDownload links
Hallmarklink
Oncogenic Signatureslink
BIOCARTAlink
KEGGlink
MicroRNA Targetslink
Cancer Gene Neighborhoodslink
Cancer Moduleslink
REACTOMElink
Gene Ontology - Cellular Componentlink
Gene Ontology - Molecular Functionlink
Gene Ontology - Biological Processlink
Chemical and Genetic Pertubationslink
Transcription Factor Targetslink
Immunologic Signatureslink
Mammalian Phenotypeslink
Human Phenotype Ontologylink