GenetICA-Network /// Microarray version /// >>RNAseq version<< /// Mouse version

© 2020 - Department of Medical Oncology, University Medical Center Groningen

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Network threshold

Predictions available for 58,433 transcripts.


Predictions are based on gene expression profiles of 29,138 samples.


These samples represent many tissue types, disease states, cellular contexts, experimental variation and therapeutic/chemical perturbations.


Gene set databaseNumber of gene sets included
Gene Ontology - Biological Process4205
Gene Ontology - Molecular Function855
Gene Ontology - Cellular Component532
REACTOME658
KEGG186
BIOCARTA213
Chemical and Genetic Perturbations2976
Transcription Factor Targets571
MicroRNA Targets205
Hallmark Gene Sets50
Cancer Gene Neighborhoods427
Cancer Modules414
Oncogenic Signatures189
Immunologic Signatures4872
Mammalian Phenotypes MGI4071
HPO Ontology3135


Precompiled version for the mac OS (11.1) of Analyertool 5 (to run first install QT version 5.15.1): link - README


For question, contact me at r.s.n.fehrmann@umcg.nl


Also see my website at: www.rudolffehrmann.nl


Support data for GenetICA-Network /// RNAseq version


Readme explaining content of files: link

consensus independent component resultsDownload links
consensus independent components link
consensus mixing matrixlink
gene set definitionsDownload links
gene set definitions: Gene Ontology - Biological Process (MSigDB v6.2)link
gene set definitions: Gene Ontology - Molecular Function (MSigDB v6.2)link
gene set definitions: Gene Ontology - Cellular Component (MSigDB v6.2)link
gene set definitions: REACTOME (MSigDB v6.2)link
gene set definitions: KEGG (MSigDB v6.2)link
gene set definitions: BIOCARTA (MSigDB v6.2)link
gene set definitions: Chemical and Genetic Perturbations (CGP MSigDB v6.2)link
gene set definitions: Transcription Factor Targets (TFT MSigDB v6.2)link
gene set definitions: MicroRNA Targets (MIR MSigDB v6.2)link
gene set definitions: Hallmark Gene Sets (MSigDB v6.2)link
gene set definitions: Cancer Gene Neighborhoods (CGN MSigDB v6.2)link
gene set definitions: Cancer Modules (CM MSigDB v6.2)link
gene set definitions: Oncogenic Signatures (MSigDB v6.2)link
gene set definitions: Immunologic Signatures (MSigDB v6.2)link
gene set definitions: Mammalian Phenotypeslink
gene set definitions: Human Phenotype Ontologylink
prediction scores for all gene/gene set combinationDownload links
Hallmarklink
Oncogenic Signatureslink
BIOCARTAlink
KEGGlink
MicroRNA Targetslink
Cancer Gene Neighborhoodslink
Cancer Moduleslink
REACTOMElink
Gene Ontology - Cellular Componentlink
Gene Ontology - Molecular Functionlink
Gene Ontology - Biological Processlink
Chemical and Genetic Pertubationslink
Transcription Factor Targetslink
Immunologic Signatureslink
Mammalian Phenotypeslink
Human Phenotype Ontologylink
mean vector of gene set members in consensus mixing matrixDownload links
Hallmarklink
Oncogenic Signatureslink
BIOCARTAlink
KEGGlink
MicroRNA Targetslink
Cancer Gene Neighborhoodslink
Cancer Moduleslink
REACTOMElink
Gene Ontology - Cellular Componentlink
Gene Ontology - Molecular Functionlink
Gene Ontology - Biological Processlink
Chemical and Genetic Pertubationslink
Transcription Factor Targetslink
Immunologic Signatureslink
Mammalian Phenotypeslink
Human Phenotype Ontologylink